Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag

Basic information

species Zea mays
transcript GRMZM2G003385_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtca-ccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag
||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||| ||||| |||||||||||  ||  || || |        | || | ||  | ||   |||  |     | |  |  |     |    |||    || | | | | | ||                                                
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcaca--aacaaga------caaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag-----------------------------------------------

upper sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag
||||| |||||||| ||||||||||||||||| || || || || || ||||| || || ||||| |||||||||||||||||||  ||||| |||||          || ||  ||   || ||  | |||||  | ||||  | |  | |  |  ||  || ||   |     || |  |  ||  | |   ||    |  || |  || |                          
GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAGgt----------atgaagcttaattttcaaatttgttgg-agcatttcttta-aataaagtttgttatattcttt----ttaagctctagctgaattttttg-ggaattctttattt--------------------------

upper sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 5'ss of exon 6
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag
|| ||||| |||||||||||||| || ||||| || || ||||| |||||||| || || |||||||| ||  | || ||||||   ||||| | |||  ||   ||||||||  || | | ||||| |  |  |    |   ||||   | | ||   |  || |   |      ||       | ||                                                  
GTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatt-tcaataaa--tttg-tgacatgggaatgttagaaaccgttcttagtagcaatgactcacttagttttggtgtcctggtttgcag--------------------------------------------------

upper sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaa-gttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag
|| ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||| |||||          ||     ||  |||   | | |||| |     || |   ||||   || | |||||||    | |  | | | ||     | | ||||| |||| | ||| ||| |                          
GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAGgt----------atggtgctttacttttctatatgttctt----ttttcaggcat--aaattgcatacatttccagattggtaagttgtca-aactcacttaatagacattt-catgt--------------------------

upper sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
lower sequence: EFJ26058 (Selaginella moellendorffii), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag
 || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| |||| |||||  | || || ||| | |||||||||||||     ||  |  |  ||   || | |||||   | |    || ||||   ||    |||| | ||                                                                          
ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAGgtgaag--ttccttgcatttttattttc-tgtgt-cagacgatgtttttctttttt----gttcttgcag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6012563|gb|AW062000.1|AW062000
EST:     ATATTGAGGCCNCCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|24765765|gb|CA400924.1|CA400924
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|60345366|gb|DN212339.1|DN212339
EST:     ATATTGAGGCCACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|67024990|gb|CO453739.1|CO453739
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|67018390|gb|CO447139.1|CO447139
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAATCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31362420|gb|CD446777.1|CD446777
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|18170490|gb|BM340330.1|BM340330
EST:     GCTTGCAAGGCAGCTGAT-AAGGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTGCCTTGTTACTGC
genomic: GCTTGCAAGGCAGCTGATGAA-GCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGC
EST: gi|61119246|gb|DN560207.1|DN560207
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|67015206|gb|CO443955.1|CO443955
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|24770211|gb|CA405340.1|CA405340
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|60394238|gb|DN227108.1|DN227108
EST:     GTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: GTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|113702480|gb|EE679984.1|EE679984
EST:     GAAGCTGTTAAG                         ATCATTTTGAATGCTGTCGAGCAAGTTGGTGGTATTCACCTTGTTACTGCC
genomic: GAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|6021846|gb|AW066774.1|AW066774
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31664103|gb|CD573283.1|CD573283
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|67014111|gb|CO442860.1|CO442860
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|213192767|gb|FM182154.1|FM182154
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGACGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACT
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACT
EST: gi|24769554|gb|CA404683.1|CA404683
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|60358060|gb|DN225033.1|DN225033
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|33091808|gb|CF051802.1|CF051802
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGACGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|166633986|gb|EG278785.1|EG278785
EST:     ATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTAC
genomic: ATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTAC
EST: gi|31359610|gb|CD443967.1|CD443967
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|37396131|gb|CF635353.1|CF635353
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|78085787|gb|DV514180.1|DV514180
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|211242237|gb|FL127857.1|FL127857
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31361690|gb|CD446047.1|CD446047
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|120481376|gb|EH211274.1|EH211274
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|60356435|gb|DN223408.1|DN223408
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|37395541|gb|CF635051.1|CF635051
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|211242234|gb|FL127854.1|FL127854
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|21810017|gb|BQ668335.1|BQ668335
EST:     TTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: TTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31354846|gb|CD439203.1|CD439203
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|33101922|gb|CF061882.1|CF061882
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|4647544|gb|AI622619.1|AI622619
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|116818560|gb|EC861602.1|EC861602
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCCAGTTGGTGGTATNTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|30088165|gb|CB886370.1|CB886370
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|6654085|gb|AW267490.1|AW267490
EST:     CGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: CGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31363155|gb|CD447512.1|CD447512
EST:     ATATTGAGGCTCCCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|40336839|gb|CK370909.1|CK370909
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|116820113|gb|EC863305.1|EC863305
EST:     ATATAGAGGCTACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGT
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGT
EST: gi|60394802|gb|DN227672.1|DN227672
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31362729|gb|CD447086.1|CD447086
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|24767470|gb|CA402612.1|CA402612
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|211240012|gb|FL127852.1|FL127852
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
EST: gi|31355731|gb|CD440088.1|CD440088
EST:     ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATCATTCTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC
genomic: ATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCCGATCATGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 786

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCCGATCATGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 388

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCCGATCATGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 829

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcat ... ttctgaacagATCATTCTGAATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACTGCCGATCATGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtcaccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT