1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctggtttctgttggtctgatttttttaggtatttctgtacaaattatacactaattctgtattctgcataccataatgcag
species | Zea mays |
transcript | GRMZM2G003076_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG GTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCEST: gi|116826683|gb|EC870490.1|EC870490
genomic: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctg ... cataatgcagGTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTC
EST: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG GTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|111990505|gb|EE331937.1|EE331937
genomic: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctg ... cataatgcagGTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTC
EST: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG GTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCEST: gi|71429005|gb|DR810055.1|DR810055
genomic: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctg ... cataatgcagGTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTC
EST: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG GTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCEST: gi|89758190|gb|DY687467.1|DY687467
genomic: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctg ... cataatgcagGTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTC
EST: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAG GTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATC
genomic: TGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctg ... cataatgcagGTTGGCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTTCTGATGTTGCAGCGTTTTCCTGTAGATTCGAAAGGAAGGAGAAAGAAATTGCAGGAGgtacactctggtttctgttggtctgatttttttaggtatttctgtacaaattatacactaattctgtattctgcataccataatgcag
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA