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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatcccctctccactatcacactcttggcccttgatccttattagcccaaccacaccccacacgccatcttgttgcagtatctgaacttgattctctcttttggttatgcag

Basic information

species Zea mays
transcript GRMZM2G001713_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001713_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g49200.2 (Oryza sativa), 5'ss of exon 11
TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatcccctctccactatcacactcttggcccttgatcctt-------------attagcccaac-------cacaccccacacgccatcttgtt---gcag-tatctga--------------------acttgattctctcttttggttatgcag
||| |||||||||||| | |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||||    ||||| |||||  ||||| |||    |||  |   |  | ||  |     ||  ||| |             ||||||  ||        ||| |    |   |||||| |||   | || ||| |||                    | ||  |    |||||||||| |||||
TCCAATGGGAGAATCATCTGTGGACTGTGGCAGCCTTGCATCCATGCCTGAGATTTCATTCACCATTGGAGGCAAAAAGTTTGCACTGAAGCCAGAAGAGgtgcgatgatttctttatggtttctcttcttttttttcttcccttgggtgcatctagattagctgaaaagttggacacgcttgccggcccatctagtttgtgtagatatttgacgcactggcttgagcacataatttactctcttcttttggttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361595|gb|CD445952.1|CD445952
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|6859877|gb|AW355871.1|AW355871
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|5055878|gb|AI734765.1|AI734765
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|60350441|gb|DN217414.1|DN217414
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|113701512|gb|EE679016.1|EE679016
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|110191302|gb|EC873200.1|EC873200
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|213188449|gb|FM186315.1|FM186315
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|4776420|gb|AI665423.1|AI665423
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|50338071|gb|CO533197.1|CO533197
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|6918711|gb|AW400241.1|AW400241
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|7216339|gb|AW562461.1|AW562461
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|33096061|gb|CF056055.1|CF056055
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|60350240|gb|DN217213.1|DN217213
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|6095472|gb|AW120139.1|AW120139
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGNGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|78027418|gb|DV495805.1|DV495805
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|29544922|gb|CB605530.1|CB605530
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|9953067|gb|BE639650.1|BE639650
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|9953068|gb|BE639651.1|BE639651
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|37380362|gb|CF626989.1|CF626989
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|7135536|gb|AW498135.1|AW498135
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|5871297|gb|AW017768.1|AW017768
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|32803024|gb|CD955260.1|CD955260
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|4804596|gb|AI665619.2|AI665619
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|60340607|gb|DN207580.1|DN207580
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|32866018|gb|CF005700.1|CF005700
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|5929089|gb|AW056381.1|AW056381
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|32802791|gb|CD955027.1|CD955027
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|6194690|gb|AW146794.1|AW146794
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|5901453|gb|AW042553.1|AW042553
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|31406139|gb|CD484871.1|CD484871
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|37378759|gb|CF626087.1|CF626087
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|17931949|gb|BM268909.1|BM268909
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|60396479|gb|DN229348.1|DN229348
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|16925379|gb|BM078447.1|BM078447
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|78026300|gb|DV494687.1|DV494687
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|5456136|gb|AI833826.1|AI833826
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|78180188|gb|DV550561.1|DV550561
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 746

TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1493

TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1021

TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 818

TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGCGTCCATGCCTGACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatcccctctccactatcacactcttggcccttgatccttattagcccaaccacaccccacacgccatcttgttgcagtatctgaacttgattctctcttttggttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG