Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCATAGGAAAGGAAGTCTTTCAAGGCTGCAGCTTTCTGTTATTCTTCTCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcag

Basic information

species Zea mays
transcript GRMZM2G000937_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 4
TCAGCATAGGAAAGGAAGTCTTTCAAGGCTGCAGCTTTCTGTTATTCTTCTCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggtttt-ccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccattta--tcccatattcaacattcatt-gtggcag--------------------------------
|||  ||  ||||||| | ||||| ||| || |||| ||||| ||||| ||| || |||| |||||||| |||||||||||||||||||||| |||||||||| ||  | |  ||  | ||  | ||  |  ||   | ||  | | ||| | | ||| |||||||     || |  | | |||  |    | ||||| |||| ||     | |                                
TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatg---tgtgtgttt-tgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag

upper sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 5
TCAGCATAGGAAAGGAAGTCTTTCAAGGCTGCAGCTTTCTGTTATTCTTCTCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttccctattt-caatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccattta--tcccatattcaacattcattg-tggcag--------------------------
||    |  ||||||    ||||||||| | ||||||||||| ||||| ||  || |||| |||||||| |||||||||||||||||||| | |||||| ||| ||| | | | |    ||   | || | |  || | |   ||  | | | | |||||||| ||     ||    | | |||  |    | ||||| |||| ||    ||                            
TCGCAGTGAGAAAGGCCACCTTTCAAGGTTTCAGCTTTCTGTCATTCTGCTTATCTTAACAAATGTTCCAATGGCTTTATATATGTCCTTGTACCATCAGgtaagttctacttttaagtaaacatattctttatctatgttgttccttaggtaaattttgttgttttctatttgcgcctagttagcttttcttttcaaaattccttaactgctcttatgtgtacattttcactttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018072|gb|FL437095.1|FL437095
EST:     CGTCAT-ACCNAATGTTCCCAGGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGTTATGTATTA-TTGTCAAAAGAAGCCTATGATGGA
genomic: CGTCATAACC-AATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGA