1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCTGATCTAGTGTTTGAATAGCGTTATTACCACCATCACCATGCATGTTTCAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagtcatctggcggatcaaagtcaatcaaccggccagagggtcttcaatctggactatatgtgtgctgttgttacag
species | Zea mays |
transcript | GRMZM2G000842_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAG GCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCAEST: gi|78108046|gb|DV526464.1|DV526464
genomic: CAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagt ... gttgttacagGCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCA
EST: TCAGGGTCTGTTCCCGAGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAG GCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCAEST: gi|74246417|gb|DT654331.1|DT654331
genomic: TCAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagt ... gttgttacagGCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCA
EST: CAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAG GCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCAEST: gi|71760398|gb|DR958335.1|DR958335
genomic: CAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagt ... gttgttacagGCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCA
EST: CAGGGTCTGTTCCCGGGAGGAGGTAGTGCGGCTGGAGACTTGAGTTCAG GCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCA
genomic: CAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagt ... gttgttacagGCGCTGTGATTTTCGACATGGAGTACGCCCGGTGGCTAGAAGACGACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGATCTAGTGTTTGAATAGCGTTATTACCACCATCACCATGCATGTTTCAGGGTCTGTTCCCGGGAGGAGGTGGTGCGGCTGGAGACTTGAGTTCAGgtaaccaagtcatctggcggatcaaagtcaatcaaccggccagagggtcttcaatctggactatatgtgtgctgttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA