1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgctgctgcgttcagttccttcactgggttctatagtaaacaattagtattttgtatatttaaaatatgcacttgacatttgtagttttatgcacatatctagttactgaactatattattacag
species | Zea mays |
transcript | GRMZM2G000749_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTCTGACAGATACATCCTATCTCTACATATACGG GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTEST: gi|211021453|gb|FL457596.1|FL457596
genomic: CTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgc ... attattacagGTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT
EST: TTCTATGAGAAGGAGCTTYTGACAGATACATCCTATCTCCACATATACGG GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTEST: gi|60341236|gb|DN208209.1|DN208209
genomic: TTCTATGAGAAGGAGCTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgc ... attattacagGTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT
EST: TTCTATGAGAAGGAGCTTCTGACAGATACATCCTATCTCCACATATACGG GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTEST: gi|88756696|gb|DY540837.1|DY540837
genomic: TTCTATGAGAAGGAGCTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgc ... attattacagGTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT
EST: GGAGCTTCTGACAGATACATCCTATCTCCACATATACGG GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT
genomic: GGAGCTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgc ... attattacagGTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTTCTGACAGATACATCCTATCTCCACATATACGGgttcgtatgctgctgcgttcagttccttcactgggttctatagtaaacaattagtattttgtatatttaaaatatgcacttgacatttgtagttttatgcacatatctagttactgaactatattattacag
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - GAGCTT