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GTTAAGTCGAGAATGATGGGTGACTCAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaagttccacacttctactcatgttatgattctgggttcaaatttagatgagcagaaaatatacagacatgaccttccattgaaaatatctga...
species | Zea mays |
transcript | GRMZM2G000510_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|31349105|gb|CD433462.1|CD433462
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAACGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|78109061|gb|DV527478.1|DV527478
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|76291091|gb|DV030659.1|DV030659
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAACGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTTGCA-GACTGGGEST: gi|211234202|gb|FK951230.1|FK951230
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTT-GCAAGACTGGG
EST: CAGCCTACAAAAGCACTCTCGATTGTTTKGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|12045964|gb|BF727999.1|BF727999
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGGTTTGGGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAEST: gi|213173050|gb|FM188194.1|FM188194
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAA
EST: CGATTGTTTTGTGAAGACGCT-AAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|71332542|gb|DR803240.1|DR803240
genomic: CGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|76292714|gb|DV032282.1|DV032282
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|71758598|gb|DR956535.1|DR956535
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|211425383|gb|FL463585.1|FL463585
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|110210924|gb|EC892821.1|EC892821
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|6501109|gb|AW202482.1|AW202482
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|71758726|gb|DR956663.1|DR956663
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|4886008|gb|AI677128.1|AI677128
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|71332543|gb|DR803241.1|DR803241
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCAAAACTTTGCAAGACTGGGAEST: gi|211234201|gb|FK951229.1|FK951229
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACTCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGAEST: gi|69351358|gb|DR452107.1|DR452107
genomic: CAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
EST: CACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGAT GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
genomic: CACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaa ... tactctgtagGGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAGTCGAGAATGATGGGTGACTCAGCCTACAAAAGCACTCTCGATTGTTTTGTGAAGACGCTAAAGAATGATgtatgtctaagttccacacttctactcatgttatgattctgggttcaaatttagatgagcagaaaatatacagacatgaccttccattgaaaatatctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaata