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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatgctagttactgacctttactcatgatctattctaacaggattctgatttacacatgcag

Basic information

species Zea mays
transcript AC198725.4_FGT007
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g43630.1 (Oryza sativa), 5'ss of exon 8
TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatgctagtt--actgacc----tttactcatgatctattctaacaggattctgatttacacatgcag--------------------
||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| |||||| ||| | ||  || ||  ||||  |    || ||| | |||  | |  |      |   | | |     | |                      
TGGGAAAATAGCGCTGCAGCAGTATGATGTGAATGCTATTGTTGACAGGCTTCTGCAATTCCTTGAAATGGACAAGGAATATGTGACGGCTGAAACTCTTgtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagtacattcaactctgggtgtctttgttcctgagtaaaaacttaaatgtag

upper sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G08590.1 (Glycine max), 5'ss of exon 6
TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatgctagttactgaccttta--ctcatgatctattctaacaggattctgatttacac---atgcag------------------------------------------------------------------------------------
||| || |||||| |||||||||||||||| ||||||||||| ||  | ||||| || |||||||| ||||| ||||| ||||| ||| ||||| |||| ||||   |    | |||  | ||   ||| | |   |  || |  |   ||  |    | || |||| |    |||||                                                                                     
TGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGgtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgcaaacatgtgttgaaagtaaggcattttgatttgacttagatatggtatggtagactaatgcgaagtttgaaagttcatttgttcag

upper sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA04G08480.1 (Glycine max), 5'ss of exon 6
TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatgctagttactgaccttta--ctcatgatctattctaacaggattctgatttacac---atgcag------------------------------------------------------------------------------------
||| || |||||| |||||||||||||||| ||||||||||| ||  | ||||| || |||||||| ||||| ||||| ||||| ||| ||||| |||| ||||   |    | |||  | ||   ||| | |   |  || |  |   ||  |    | || |||| |    |||||                                                                                     
TGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGgtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgcaaacatgtgttgaaagtaaggcattttgatttgacttagctatggtatggtagactaatgcgaagtttgaaagttcatttgttcag

upper sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
lower sequence: AT5G11490.2 (Arabidopsis thaliana), 5'ss of exon 6
TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaag-tgtttgtaatgctagttactgacct--ttactcatgatct--attctaacaggattctgatttacacatgcag--------------------------
|||||| || ||  |||| ||||||||||| ||||| ||||| || || ||||| |||||||| || ||||| ||||| |||||||| ||||||||| | ||||  | |   |    ||| | || ||  |  ||   ||| |  |  || || | |   ||   |||| || |  ||                           
TGGAAAGATTGCTTTGCAACAGTATGATGTAAATGCGATTGTTGATAGACTTCTTCAATTTCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTGgtaaactatcatttgaactattcacggagatgattggccatcacattgatacttatattgtttacattttcata-acaattccacttgtctggttcctcttctag

upper sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatg----ctagttact--gacctttactcatgatctattctaacaggattctgatttacacatgcag----------------------------------------------------------------------------------------
||| |||||||||||||||||||||||||| |||||||| || || |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || | | |||  |       |||| | ||  ||  |||| |     |  |||  ||||     |  |  | || |   |                                                                                         
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag