1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactgcactgcactagcaaatcctcaatgttgtgtttttgacactacgtctgttttcttttttctag
species | Zea mays |
transcript | AC190609.3_FGT004 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG ATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCAEST: gi|78116811|gb|DV535198.1|DV535198
genomic: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactg ... ttttttctagATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
EST: AAATGGTGCATCCCAGTCAAAGGATGGAAAGGGCATTGTGCTTATGGGAG ATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTGGGAAAATCGAGTCAEST: gi|37379778|gb|CF626648.1|CF626648
genomic: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactg ... ttttttctagATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
EST: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG ATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCAEST: gi|211431081|gb|FL481796.1|FL481796
genomic: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactg ... ttttttctagATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
EST: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG ATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCAEST: gi|86469808|gb|DY236178.1|DY236178
genomic: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactg ... ttttttctagATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
EST: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAG ATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
genomic: AAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactg ... ttttttctagATCTTGTCCTTTCCAACAAGTTGGTTATCTATGACTTGGAAAATCGAGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGACGTATACTGCGTGGGATTCCAAAATGGTGCATCACAGTCAAAGGATGGAAAGGACATTGTGCTTATGGGAGgtccgtactgcactgcactagcaaatcctcaatgttgtgtttttgacactacgtctgttttcttttttctag
- - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - GATGGA