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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttctacactcttgccatttagaatttgtttaattttggtggacaagaattcatcctgacttatttag

Basic information

species Zea mays
transcript GRMZM5G896731_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G896731_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g22610.1 (Oryza sativa), 5'ss of exon 6
-----------------------------------------GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttctacactcttgc-catttagaatttgtttaattttggtggacaagaattcatcctgacttatttag
                                         | |||||||  | |||||||| ||||||||||| ||||||||| | ||||||||||||||||  ||| |||    ||  |||||     |   ||||| | | |  | |    |  |   | ||||||| ||
TTTTTTACATTGACAAAATATTTACCTTTCTAGCTTATCAGGGTGAAGAGCTTGATATACCATTTTCGTAAGAACCGAGAATTTGGTCGATTAAGGATTGgtaggttcgacatctgtgttcatttcc--ctcccttaatgtggataaatattcttatactttaacttattcag

upper sequence: GRMZM5G896731_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g22610.2 (Oryza sativa), 5'ss of exon 7
GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttctacactcttgc-catttagaatttgtttaattttggtggacaagaattcatcctgacttatttag
| |||||||  | |||||||| ||||||||||| ||||||||| | ||||||||||||||||  ||| |||    ||  |||||     |   ||||| | | |  | |    |  |   | ||||||| ||
GGTGAAGAGCTTGATATACCATTTTCGTAAGAACCGAGAATTTGGTCGATTAAGGATTGgtaggttcgacatctgtgttcatttcc--ctcccttaatgtggataaatattcttatactttaacttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933882|gb|CF038694.1|CF038694
EST:     TGTTATATACCACTTCCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCCAGCTGGCCAGATGGGTCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
EST: gi|60358732|gb|DN225705.1|DN225705
EST:     TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
EST: gi|71438321|gb|DR819371.1|DR819371
EST:     TGTTATATACCACTTTCGTAGGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCC
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCC
EST: gi|78085319|gb|DV513712.1|DV513712
EST:     TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATCG                         GAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
EST: gi|89250808|gb|DY622594.1|DY622594
EST:     TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
EST: gi|86468848|gb|DY235218.1|DY235218
EST:     TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
EST: gi|78109135|gb|DV527552.1|DV527552
EST:     TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTG                         GAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA
genomic: TGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTAAGGATTGgtactttcta ... acttatttagGAATTGGACGGCCAGCTGGCCAGATGGATCCTAAAGCCTTTGTTCTTCAGA