1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGTGCTGATCAAGACATGGCAAGATTCAGAGTTCTCCATGCTGCCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAGgtaatcgatcaagagtctaaatctgaaacgggaaaattatatatacttgctacttggtcgcataacaacactatgtgacctggcaaaactgcag
species | Zea mays |
transcript | GRMZM5G879749_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAG CGGCGACACAGATTCAGTCGTCCCGGTGACCGCGACGAGGTTCGCCATCAGEST: gi|101395268|gb|EB819564.1|EB819564
genomic: CCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAGgtaatcgatc ... aaaactgcagCGGCGACACAGATTCAGTCGTCCCGGTGACCGCGACGAGGTTCGCCATCAG
EST: CCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAG CGGCGACACAGATTCAGTCGTCCCGGTGACCGCGACGAGGTTCGCCATCAG
genomic: CCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAGgtaatcgatc ... aaaactgcagCGGCGACACAGATTCAGTCGTCCCGGTGACCGCGACGAGGTTCGCCATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTGCTGATCAAGACATGGCAAGATTCAGAGTTCTCCATGCTGCCGACGTACAAGAAGCTGATGAAAGCAGGATTGAGGATATGGGTGTTCAGgtaatcgatcaagagtctaaatctgaaacgggaaaattatatatacttgctacttggtcgcataacaacactatgtgacctggcaaaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT