1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttttgacttcattttatctgcttcattgtttaccattatctgtttgggctggagatttggagcgcttgaatttcagtcttatatgctctatcaagtattaactcttgacttgatttctttgaacag
species | Zea mays |
transcript | GRMZM5G871861_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGG ATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGTEST: gi|32834214|gb|CD973892.1|CD973892
genomic: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttt ... ctttgaacagATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGT
EST: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGG ATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGTEST: gi|60341182|gb|DN208155.1|DN208155
genomic: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttt ... ctttgaacagATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGT
EST: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGG ATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGTEST: gi|74240574|gb|DT648488.1|DT648488
genomic: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttt ... ctttgaacagATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGT
EST: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGG ATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGT
genomic: CCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttt ... ctttgaacagATCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATGTGGGgtaaattttttgacttcattttatctgcttcattgtttaccattatctgtttgggctggagatttggagcgcttgaatttcagtcttatatgctctatcaagtattaactcttgacttgatttctttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG