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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTACTTGATGATGAAGCAAATAAGAGATCAAAACAAAAGCCAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcactgaaatactattgttgtagctgtagaccataattctgtaccagagtattgataagttatgttatttgttatgttctattatgaaacactgaatttgctaatggctgatggtagttatttttttatttctatgttgagcatttcag

Basic information

species Zea mays
transcript GRMZM5G870572_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870572_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g25060.1 (Oryza sativa), 5'ss of exon 7
AATTTACTTGATGATGAAGCAAATAAGAGATCAAAACAAAAGCCAGGTTTCAAGAGTGC---ACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcactgaaatactattgttgtagctgtagaccataattctgtaccagagtattgataagttatgttatttgttatgttctattatgaaacactgaatttgctaatggctgatggtagttat-ttttttatttctatgttgagcatttcag----
||||||||||| || |||||||||||  |||||||||||| |||||||||||| |||||    || |  ||| |||||||| |  |||||||||||||| || | |       |||| ||||    ||| |  ||  ||              |  || ||| |  | | |  ||| || | ||   | ||| | | |||| | || |||| || || | || || ||| ||||| | |    |   ||      
AATTTACTTGAGGACGAAGCAAATAAAGGATCAAAACAAAGGCCAGGTTTCAAAAGTGCCATGCTAGCTGATGTTAGGCCATCGGCTGATGGTCGGgtacgttatt-------tatt-ttgt----gtaaattatggtt--------------tattatgttctagtctgttgtatcttatcttgccagacattcactttggtgatagctggtgatattgatgttatttctttctttttcctactcctctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148959670|gb|EC905590.2|EC905590
EST:     CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGG                         ACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
genomic: CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcact ... agcatttcagACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
EST: gi|211184532|gb|FL153187.1|FL153187
EST:     CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGG                         ACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
genomic: CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcact ... agcatttcagACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
EST: gi|31356392|gb|CD440749.1|CD440749
EST:     CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGG                         ACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
genomic: CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcact ... agcatttcagACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG
EST: gi|13150541|gb|BG320863.1|BG320863
EST:     CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGG                         ACAAACAAGGTTACTTTCCAGATCACGCCTGABATGATACATCAG
genomic: CAGGTTTCAAGAGTGCACTTGTAGATATTAGGCCAACAACTGATGGTCGGgtatgtcact ... agcatttcagACAAACAAGGTTACTTTCCAGATCACACCTGAGATGATACATCAG