1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTCAGTTGAGGCGGAAACACCTGATCTTGTTGCTGTGTAATTTCACAGCTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgctttgtgtgacacgtagtcattttctggataatgagatctgctgctgccctgagcgtttgtcttcctgcgcctactgatcaggacatgtaatttcttttttggtgccctcag
species | Zea mays |
transcript | GRMZM5G868757_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGACAGTGTCACGGAGAACGGGACCAATGEST: gi|4609963|gb|AI600802.1|AI600802
genomic: AGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACG-CAGTGTCACGGAGA-CGGGACCAATG
EST: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGAEST: gi|4804325|gb|AI666191.1|AI666191
genomic: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
EST: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGAEST: gi|60336794|gb|DN203767.1|DN203767
genomic: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
EST: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGAEST: gi|166472734|gb|EG227362.1|EG227362
genomic: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
EST: CAAGGTACCCAATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGAEST: gi|33094129|gb|CF054123.1|CF054123
genomic: CAAGGT-CCC-ATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
EST: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGAEST: gi|33095168|gb|CF055162.1|CF055162
genomic: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
EST: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAAT GACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
genomic: CTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgct ... gtgccctcagGACATGGATGGTTAGAACTGCACGCAGTGTCACGGAGACGGGACCAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCAGTTGAGGCGGAAACACCTGATCTTGTTGCTGTGTAATTTCACAGCTGTTACACTTCCGCGAGAGGCTTGGTCAGCAAGGTCCCATTTGCAAAATgtgagatgctttgtgtgacacgtagtcattttctggataatgagatctgctgctgccctgagcgtttgtcttcctgcgcctactgatcaggacatgtaatttcttttttggtgccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG