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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgccacaatatgattatattctcttgcagttcagtttgtatattatatatgttatttctgttttcaaacataaagcgtaatcattaaaccgata...

Basic information

species Zea mays
transcript GRMZM5G866918_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G866918_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g43720.1 (Oryza sativa), 5'ss of exon 7
GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgccacaatatgattatattctcttgcagttcagtttgtatattatatatgttatttctgttttcaaac-ataaagcgtaatcattaaa----ccgata
|||||||||| |||||  ||||||||||||| ||||| ||||||||||||||        |    |  |  ||  ||  |||   | ||    |||   | | ||  |||||||  ||  | ||||| |  || |||| ||    | ||| 
GTGCTTGGCCAGTTCTAGTTGATGATTTTGTGGAGCATATGCACAGgtttgtcattcttgtcct-tagtgctcatttagagt---gctttccaattgagtttattgattctgttcccattccataaacctaaagcattcaattttctgat-

upper sequence: GRMZM5G866918_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G49490.1 (Glycine max), 5'ss of exon 7
GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttg------ttgccacaatatga------ttatattctcttgcagtt---cagtttgtatattatatatgttatttc-----tgttttcaaacataaagcgtaatcattaaaccgata----------------------------------
 ||||||||||||| | || |||||||||||||||||  ||||||||||||      ||    | | |  |      ||| ||| |   ||| ||   || |  |   ||| ||    || ||       |  ||| | |  ||  |  | || |||  | | |                                    
-TGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATGTGCACAGGtttgatttctttatggccaaacaaagcatcttaaatttttaggcaattttgcaataagccaattttaggcattgttctgtgattaattttatatgtattggattat-attttatcaacttctctgactttcatttggtacattgtcctgcagg

upper sequence: GRMZM5G866918_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G37200.1 (Glycine max), 5'ss of exon 7
GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc-----------acaatatg-attatattctcttgcagtt---cagtttgtatattatatatgttatttc-----tgttttcaaacataaagcgtaatcattaaaccgata------------------------
|||||||||||||| | || ||||||||||||||||| ||| ||||||||| |  |           ||||     |||| ||| |   ||| ||   || |  |   ||| ||    || ||       |  |||   | |||  |  | | ||||  | | |                          
GTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATATGTACAGgtttgatttctttatgaccaaacaaagcatattaaatttttaggcaattttgcaataagccaattttaggcattgttctgtgattaattttgtatatattggatta-cattttatcaacttctctgaccttcattgtcttgcag

upper sequence: GRMZM5G866918_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0108g00950.t01 (Vitis vinifera), 5'ss of exon 7
GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttg--ttgccacaatatgattatattctcttgcagttcagtttgtatattatatatgttatttctgttttcaaacataaagcgtaatcattaaaccgata--
|||||||||||||| | |||||||||||||||||||| ||| |||||||||  ||||  |  |   ||||  || || || | |    | |  ||||| | | | | ||   | ||   ||   ||   | |      | || |  |   
GTGCTTGGCCTGTTTTAATTGATGATTTTGTTGAGCACATGTACAGgtttgatttgcttccctggaattac-ttttcatggaatct--tctagatatt-tctttatcatcgttattaataatattattacttttcatctgaaacttttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211293376|gb|FL445066.1|FL445066
EST:     TGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: TGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|32825930|gb|CD965608.1|CD965608
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15545700|gb|BI643494.1|BI643494
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|67020824|gb|CO449573.1|CO449573
EST:     ATTTTGTTGAGCAAATGCACAG                         AATTCATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: ATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15590460|gb|BI675076.1|BI675076
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCCCAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15590461|gb|BI675077.1|BI675077
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT