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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGAGGGAGGTCTATGAAGTTGTGCCGGCTCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctcgaaagtcaaaactcagcagttcagcacctgcaaattctgaactggttataatctttgcttgcccattttgctgcag

Basic information

species Zea mays
transcript GRMZM5G862931_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862931_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g40790.1 (Oryza sativa), 5'ss of exon 8
GCAGTGAGGGAGGTCTATGAAGTTGTGCCGGCTCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctcgaaagtcaaaactcagcagttcagcacctgcaaattctgaactggttat-aatctttgcttgcccattttgctgcag
||||||||||| || ||||||||| |||| |||||| |||||||  ||||||| |||||||  |||||||||||||||||||||| |          ||  ||||||  |||| |||    |||| || |||| || |||| |||  |    ||||  |  ||||||||
GCAGTGAGGGAAGTTTATGAAGTTCTGCCAGCTCGAGAATGGTCCAAGACAGAATCTCGCACAAACAAGATAGTTGTCATAGgtatatt--------tcgtaactcactagtttagcgatggcaacttatgaattgtttattaattatcatatgcctgtggtgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76926511|gb|DV170903.1|DV170903
EST:     TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAG                         GCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
genomic: TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctc ... tttgctgcagGCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
EST: gi|32912673|gb|CF017485.1|CF017485
EST:     TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAG                         GCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
genomic: TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctc ... tttgctgcagGCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
EST: gi|33091555|gb|CF051549.1|CF051549
EST:     TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAG                         GCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
genomic: TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctc ... tttgctgcagGCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
EST: gi|161589835|gb|EY962622.1|EY962622
EST:     TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAG                         GCCGCAATCTGGATATCAATGTACTTCAAG
genomic: TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctc ... tttgctgcagGCCGCAATCTGGATATCAATGTACTTCAAG
EST: gi|5607652|gb|AI901319.1|AI901319
EST:     TCGAAAATGGTCTGAGNCAGAGTCTCGCATGAACAAGATAGTTGTCATAG                         GCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA
genomic: TCGAAAATGGTCTGAGACAGAGTCTCGCATGAACAAGATAGTTGTCATAGgtaaaacctc ... tttgctgcagGCCGCAATCTGGATATCAATGTACTTCAAGATTCTTTTAGTGGTTGCAAGA