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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttccttgttacttggacgagccctctgtaattatatacaaataacatgcaaccagaatcaatggtgtatcatattctaaacaagtaaggctatc...

Basic information

species Zea mays
transcript GRMZM5G860137_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860137_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g02020.1 (Oryza sativa), 5'ss of exon 7
TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttccttgttacttggacgag-ccctctgtaa-ttatatacaaataacat-gca-accagaatcaatggtgtatcatattctaaacaagtaaggctatc--
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TTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttatttgata-----acaattctctaagtgacttattaacagaaaactttgcagagtagtattaaca-tgcaaccaaatgtcagtgcattaccatattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78180536|gb|DV551029.1|DV551029
EST:     ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|71426142|gb|DR807192.1|DR807192
EST:     ACTTTTAAGACGAAGGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|93281947|gb|EB674211.1|EB674211
EST:     TGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: TGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|149110542|gb|EE294180.2|EE294180
EST:     ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|110202377|gb|EC884274.1|EC884274
EST:     TGGCAATTTC-TCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: TGGCAA-TTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|71298332|gb|DR785147.1|DR785147
EST:     ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|6994169|gb|AW453383.1|AW453383
EST:     ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|12047245|gb|BF729384.1|BF729384
EST:     ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCT
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: gi|110939957|gb|EE160114.1|EE160114
EST:     GACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG                         TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: GACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT