1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAGgtaatctggtcttgctactagtgttgatttgaatgttgtagattcaaaaataagttgtgtagtgtcagaaatcaaagtgacagaacatacacgaaaccatccacacaacatttacagtgcccataacaacagttgacataatttcttttcctcttcagagttgacatgattcctttggtgttccatatgtgtag
species | Zea mays |
transcript | GRMZM5G860137_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAG TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGTEST: gi|71298332|gb|DR785147.1|DR785147
genomic: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAGgtaatctggt ... atatgtgtagTTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGT
EST: GACAAGGATGAGAGTCTTGCAAAG TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGTEST: gi|6994169|gb|AW453383.1|AW453383
genomic: GACAAGGATGAGAGTCTTGCAAAGgtaatctggt ... atatgtgtagTTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGT
EST: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAG TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGTEST: gi|12047245|gb|BF729384.1|BF729384
genomic: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAGgtaatctggt ... atatgtgtagTTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGT
EST: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAG TTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGT
genomic: GTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAGgtaatctggt ... atatgtgtagTTTGATCCAGTAAAGCTGAAGAAACTTGGGCCAACTTTTAAGACGAATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATGAGAGTCTTGCAAAGgtaatctggtcttgctactagtgttgatttgaatgttgtagattcaaaaataagttgtgtagtgtcagaaatcaaagtgacagaacatacacgaaaccatccacacaacatttacagtgcccataacaacagttgacataatttcttttcctcttcagagttgacatgattcctttggtgttccatatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG