Sequence
atgc intronic sequence ATGC exonic sequenceATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaattaaaaaaatgcatgtgttttgctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G859195_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g58790.2 (Oryza sativa), 5'ss of exon 7
ATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaatt-aaaaaaatgcatgtgtt-------ttgctcag---
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ATTGTTGAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAAGCATGCTCAACAGCTGAAGTTTACAAGgtaacatattttcatagcatgaattttgaaatgaatcatttactaaaatacttgcactgcag
upper sequence: GRMZM5G859195_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G04120.1 (Glycine max), 5'ss of exon 7
ATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaattaaaaaaatgcatgtgttttgctcag----------------------------------------
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GTTGTTCAGAATATTCCTCCACCAGTATCTCTAGATGTTCCAATGGTTCTCATAAAGCCCCCAGAAGCATGTTCAACTGCCGAAGTCTACAAGgtattt----gacttttcggagtagtaatgaaac-catacttccccctccctcttttatagtcacaaatttaacaacttccaatgatacag
upper sequence: GRMZM5G859195_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G08930.1 (Glycine max), 5'ss of exon 7
ATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaattaaaaaaatgcatgtgttttgctcag--------------------------------------
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GTTGTTCAGAATATTCCTCCACCAGTATCTCTGGATGTTCCAATGGTTCTCATAAAGCCCCCAGAAGCATGTTCAACTGCTGAAGTCTACAAGgtatttgacttttaggggtagtaat-gaaaccatacttcccccctccctctttttatagtcacaaatttaacaacttccaatggttcag
upper sequence: GRMZM5G859195_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0009g02320.t01 (Vitis vinifera), 5'ss of exon 7
ATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaattaaaaaaatgc-atgtgttttgctcag---------------------------------------------
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GTTGTTGAAGATATTTCCCTGCCAATACCTTTGGACATTCCAATGGTTCTTGTAAAGCCACCGCAGGCATGCTCCACCGCTGAAGTTTACAAGgtaatatagatttgatgaatttagtgaagagacttttattcgccatgtttttattttctgatcaatttatctttctaagacaagttttgattctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32934305|gb|CF039117.1|CF039117EST: TGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAG AATCTTCTTGTGCTGCAGCGATTCAGGTTGGAACAAACAAGTCAAGCTGAT
genomic: TGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaata ... ttttgctcagAATCTTCTTGTGCTGCAGCGATTCAGGTTGGAACAAACAAGTCAAGCTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTCCAAGATATCCCAAATCCCTTGCCGGAAAATTTACCAATGGTTCTTATAAAGCCACCTGAAGCATGCTCAACTGCTGAAGTTTACAAGgtaactaataaacacttccttaaattaaaaaaatgcatgtgttttgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG