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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttcaattgaaaccactaaattcagttgttttctttcatttccctcccatggcacaattgttattacattcatgtcaagctagacagttctgttt...

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 7
GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttcaattgaaaccactaaattcagttgtt-ttctttcatttccctcccatggcacaattgttattacattcatgtcaagctagacagttctgttt---
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  | |  | | || |||   | ||  |  |||||| | | |   |   |     ||  ||   | || || | |     |  | | |   |  |   
GGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGgtaatat--agtctatatcagtaatcgctgtattaattctttgaatgcgggcgtctaatttaaaggtc-ctgcaatcgtttggtattt-atattcaagactaag

upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA01G07190.1 (Glycine max), 5'ss of exon 7
GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttcaattgaaaccactaaattcagttgttttctttcatttcc-ctcccatggcacaattgttattacattcatgt--caagctagacagttctgttt
||||| ||||||||||||||||| |||||||||||  | ||||||||  ||||||||||||| ||||   |||  |   |  ||     ||||     |    |  | ||   || ||||     |  |    |  || |  |||  |||  | || | | || || 
GGATCAAATCTTGATAGCAATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTAGgtag-attctttcacattcatctttttcaaaaaataaaataaaattatactgccattttctaccttcagtcccaatagtgtatcaaatttga-aatgctttt-

upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G13010.1 (Glycine max), 5'ss of exon 3
GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttcaattgaaaccactaaattcagttgttttctttca--tttccctcccatggcacaattgttattacattcatgtcaagctagacagttctgttt
||||| |||||||||||| |||| |||||||||||  | ||||||||  ||||||||||||||||||   |||  |   |  ||     ||||      |    |||  ||   || ||||     |  |    |   | |  |||     |  |   | ||| | 
GGATCAAATCTTGATAGCTATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTTGgtag-attctttcacattcatctttttcaaaaaaataaaatcaaattatgctgccattttctaccttcagtctaaatagtgtatctttccatgatgctgct-

upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgta----atgttcaattgaaac----cactaaattc-agttgttttctttcatttccc--tcccatggc-acaattgttattacattcatgtcaagctagacagttctgttt
|| || || || ||||||||||| ||||||||||| |||||||| ||| ||||||||||  ||||||    |   | | |||  ||    ||||  || | | |||  |   ||   ||| |  |   ||| | ||||   || || | || ||  ||                  
GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttggttctcagttgaatgactacaagctttgttgcttttattgcag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654521|gb|BM499326.1|BM499326
EST:     TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG                         GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
genomic: TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttca ... actgatgcagGAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
EST: gi|18654522|gb|BM499327.1|BM499327
EST:     TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG                         GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
genomic: TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttca ... actgatgcagGAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
EST: gi|18649151|gb|BM497970.1|BM497970
EST:     TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG                         GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
genomic: TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttca ... actgatgcagGAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
EST: gi|88755251|gb|DY539392.1|DY539392
EST:     TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTG                         GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA
genomic: TAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgtaatgttca ... actgatgcagGAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTA