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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCTGTTATTCCACTATGATGGCCGGGTGAGTGAGTGGGATGAATTTGAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATGgtgagtttcatttgtgctctagtgtactgttcgcagttcaattgcttaatttgaaatgatctagtgctaatttttttgtttgtgcacacaactctag

Basic information

species Zea mays
transcript GRMZM5G846339_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846339_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g01760.1 (Oryza sativa), 5'ss of exon 7
CTATTCTGTTATTCCACTATGATGGCCGGGTGAGTGAGTGGGATGAATTTGAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATGgtgagtttcatttgtgctctagtg-tactgttcgcagttcaattgcttaatttgaaatgatctagtgctaatttttttgtttgtgcacacaactctag
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CTATTCTGTTGTTCCATTATGATGGTCGGGTGAGTGAGTGGGACGAGTTTGAGTGGTCGAAACGAGCCATCCATATAAGTGCCAGGAAACAAACTAAGTGgtctgctacttt---gctctgatgctattgtcattctctcaggtgctcaattttgaaggatatcttctaaagattt--atttatgcacatacatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32927854|gb|CF032666.1|CF032666
EST:     GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATG                         GTGGTATGCCAAGAGATTCCTGCATCCTGATATTGTGGCAGCTTATGAGTA
genomic: GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATGgtgagtttca ... acaactctagGTGGTATGCCAAGAGATTCCTGCATCCTGATATTGTGGCAGCTTATGAGTA
EST: gi|44682283|gb|CK787331.1|CK787331
EST:     GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATG                         GTGGTATGCCAAGAGATTCCTGCATCCTGATATTGTGGCAGCTTATGAGTA
genomic: GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATGgtgagtttca ... acaactctagGTGGTATGCCAAGAGATTCCTGCATCCTGATATTGTGGCAGCTTATGAGTA
EST: gi|148950258|gb|EC895810.2|EC895810
EST:     GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATG                         GTGGTATGCCAAGAGATTCCTGCATCCTG
genomic: GAGTGGTCCCAGCGAGCTATCCATATTAGTGTCAGGAAACAAACTAAATGgtgagtttca ... acaactctagGTGGTATGCCAAGAGATTCCTGCATCCTG