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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgctagtgccactgcattttaaatagacctaactaccaattggtagtgcttaactctaacaggattcctttgtatatatctgtag

Basic information

species Zea mays
transcript GRMZM5G845755_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 8
GCATAGCAGGAAACCCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgctagtgccactgc----------attttaaatagacctaactaccaattg-gtagtgcttaactctaacaggattcctttgtatatatctgtag
||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||| || |  ||||| ||| | |||||| || |          ||   ||||  ||||| ||  || |   ||| |  |    |  |||| |||| |||| | ||| |  |   
GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtattt-ccagtgccccttcttcagaggttatcacaaatgtaccta-ctgtcattaaagtattaatggttttcaacatgatttcttt-tctatgttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6465600|gb|AW191195.1|AW191195
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|5846756|gb|AI999839.1|AI999839
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTAT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTAT
EST: gi|32846294|gb|CD985975.1|CD985975
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|194717129|gb|FK934282.1|FK934282
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|29945847|gb|CB815850.1|CB815850
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|60350778|gb|DN217751.1|DN217751
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|94476026|gb|EB704984.1|EB704984
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGCCAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|61117730|gb|DN558691.1|DN558691
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|60354727|gb|DN221700.1|DN221700
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|32849734|gb|CD989415.1|CD989415
EST:     CCTGGACAAAGTTTATTAATACAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|4609748|gb|AI600587.1|AI600587
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|61117733|gb|DN558694.1|DN558694
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|61117731|gb|DN558692.1|DN558692
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|61117732|gb|DN558693.1|DN558693
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: gi|148990947|gb|EE032376.2|EE032376
EST:     CCTGGACAAAGTTTATTAATGCAGACAACCAACCCCTAGTGTTTCATGAG                         GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT