Sequence
atgc intronic sequence ATGC exonic sequenceTGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 6
TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgta-cttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccag
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TCTCAAATTCTGCTTCCATGAGAACTTAGTTCTGCTTGCAGATGAAGTCTATCAACAGAACATTTATCAAGATGAGCGCCCATTTATAAGTGCTAGAAAGgtaacttttgatttctgacccgtgatgcttt-atcatgaatacaacatttc---ccaaccttttactttcatgtggtat-accaaaaattaaaatgaacataata------
upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 8
TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccag
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ATTGCACTTCTGTTACCAAGAAAACTTAGTCTTGCTTGGAGATGAAGTTTACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgta-----------tggc-----gctgttatgaaattaact-attcctgggtctttacctggagactat-cttgaatttat---accatattttcctccaaccctgaaag
upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S341_73V6.2 (Physcomitrella patens), 5'ss of exon 7
TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgccttt----ctcgactttttccag-----------
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GATCGAGTTTTGTATACAAGAAAGAATTGTGTTGATGGCTGACGAAGTTTACCAGCAAAACGTTTATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgta-tcccgttgcagtattaccacttcttctcttacgaatacatcaaggcttcttctgtaatgtttgatattggtacgcatttttcagtattgtttaaacatgtcttttttctttggcgatgtag
upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 7
TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttt-------tgattt-----ctggcca-------ataa------ttcttttgtcatgaactcatggtt---gcaacttgacctaggcttaatatttgggct-caccaaaacatgcctttctcgactttttccag----
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TATCGAGTTCTGCATCAAGGAAAAGATTGTGCTGATGGCTGACGAGGTTTACCAGCAAAACGTTTATCAAGATGAGCGCCCCTTTATCAGCGCGAGGAAGgtattttgttgcggtgattttccttctactcgtagaaacataagaaaccttctctggctacgaattatcagtttaaagaatttatgtcatttgaaatgacaaggtttcattcaaacatgtctttgt--gcttttggtaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7216933|gb|AW563070.1|AW563070EST: ATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAG GTTATGTTCGACATGGGTCCGCCAATAAGCAGGGAGGTTCAGCTTGTTTCT
genomic: ATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttga ... ctttttccagGTTATGTTCGACATGGGTCCGCCAATAAGCAGGGAGGTTCAGCTTGTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA