Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcgtcgtctgtgactgactcctgtccatagcacttgctcaagaactccccgcctcttcttttgtttttgaaacgattaaacgaagctccagctgtagcttacaccataataaaccacag

Basic information

species Zea mays
transcript GRMZM5G836250_T03
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105896|gb|DV524314.1|DV524314
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|76282214|gb|DV021782.1|DV021782
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|149085230|gb|EE174737.2|EE174737
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|89759141|gb|DY688054.1|DY688054
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCTCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|93284534|gb|EB676798.1|EB676798
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|83279121|gb|DV943129.1|DV943129
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|50324976|gb|CO520102.1|CO520102
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|89759142|gb|DY688055.1|DY688055
EST:     ATTCAGTCCACGAAGGGGACGCCAAGAACTGGGACGCGCCTGTTGCCCAA                         GTT-GTGGAAAAGTGCAAGTA
genomic: ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCC-AAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTA
EST: gi|149088446|gb|EE177549.2|EE177549
EST:     ATTCAGTNCA-CGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: ATTCAGT-CAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|71768088|gb|DR966025.1|DR966025
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         ATTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|86471231|gb|DY237601.1|DY237601
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|149095912|gb|EE181574.2|EE181574
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCNAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|32838746|gb|CD978427.1|CD978427
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTCGTGGAGAAGTGCAAGT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGT
EST: gi|50331044|gb|CO526170.1|CO526170
EST:     GGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: GGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|149085229|gb|EE174736.2|EE174736
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|148932776|gb|EE285437.2|EE285437
EST:     ATTCAGTCAACGAANGGGA-CGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: ATTCAGTCAACGAA-GGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|78113531|gb|DV531922.1|DV531922
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|148929799|gb|EE285436.2|EE285436
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|32920564|gb|CF025376.1|CF025376
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTCGTGGAGAAGTGCAAGT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGT
EST: gi|88752752|gb|DY536893.1|DY536893
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|71770842|gb|DR968779.1|DR968779
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|149088445|gb|EE177548.2|EE177548
EST:     CAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: CAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|86473014|gb|DY239384.1|DY239384
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|149064612|gb|EE286483.2|EE286483
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|71317307|gb|DR795338.1|DR795338
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|74244032|gb|DT651946.1|DT651946
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAAGTGCA-GTACCCCAAAGATGGCTCGCCACCAAGATCTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAA-GTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTT
EST: gi|110201016|gb|EC882913.1|EC882913
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|94476278|gb|EB705236.1|EB705236
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTAGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|50332538|gb|CO527664.1|CO527664
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: gi|71757120|gb|DR955057.1|DR955057
EST:     ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGTCCAA                         GTT-GTGGAGAAGTGCAAGTACCCCAAAGATG
genomic: ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTG-CCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATG
EST: gi|149099889|gb|EE185942.2|EE185942
EST:     TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA                         GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCCCCAAGATCTTT
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcgtcgtctgtgactgactcctgtccatagcacttgctcaagaactccccgcctcttcttttgtttttgaaacgattaaacgaagctccagctgtagcttacaccataataaaccacag

- - - - - - - - - - - - - - - - - - - - - -  AAGAAC