1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATAGGGCTCCAGAGCTCATATTTGGTGCCACTGAGTATACCACAGCGATTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtcttcgatatttattggcatgtttattttttcaagtcaacaaaaaaagtcttttgaagttcacattttcttacaagaactatttcaacag
species | Zea mays |
transcript | GRMZM5G835235_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|8516668|gb|BE123393.1|BE123393
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|32865481|gb|CF005163.1|CF005163
genomic: TGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGGGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|33093876|gb|CF053870.1|CF053870
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|20803001|gb|BQ294051.1|BQ294051
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|213187001|gb|FM192338.1|FM192338
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|32830913|gb|CD970591.1|CD970591
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|32830394|gb|CD970072.1|CD970072
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGTCAT CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCGAGEST: gi|32865499|gb|CF005181.1|CF005181
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGEST: gi|32831124|gb|CD970802.1|CD970802
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
EST: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAG CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
genomic: TTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtc ... atttcaacagCCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAGGGCTCCAGAGCTCATATTTGGTGCCACTGAGTATACCACAGCGATTGACATTTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTATGCTAGGGCAGgtatggtgtcttcgatatttattggcatgtttattttttcaagtcaacaaaaaaagtcttttgaagttcacattttcttacaagaactatttcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT