1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCAAATAGGGTTGCTGTTGTGGTCGCAAACGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgctaaagctgtttcatatagggcatccacagttatcagtagagtgtaaaatgcattagttctaatgttgtcgacaaaaactgcttctgtag
species | Zea mays |
transcript | GRMZM5G832989_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAG GGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCTEST: gi|61119815|gb|DN560776.1|DN560776
genomic: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgct ... gcttctgtagGGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCT
EST: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAG GGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCTEST: gi|67041884|gb|CO468139.1|CO468139
genomic: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgct ... gcttctgtagGGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCT
EST: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAG GGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCT
genomic: ACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgct ... gcttctgtagGGTGAGATGCAGCAGCTTCGTGACAAACTTGCTATTGCAGAGAGAACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAATAGGGTTGCTGTTGTGGTCGCAAACGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgctaaagctgtttcatatagggcatccacagttatcagtagagtgtaaaatgcattagttctaatgttgtcgacaaaaactgcttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG