Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTGATACCGCTGGACTGAAAAAATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttactacaacgtaatttcattctgcaagttatgaatgacacattatctgctatttgttatagaatattctaataagctttaatataatgttgtgt...

Basic information

species Zea mays
transcript GRMZM5G825226_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825226_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g56230.5 (Oryza sativa), 5'ss of exon 7
GTTCCTTGATACCGCTGGACTGAAAAAATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgt------tactacaacgtaatttcattctgcaagttatgaatgacacattatctgctatttgttatagaatattctaataagctttaatataatgttgtgt
||| |||||||| | |||| |||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||| ||      | |||||  ||||||  |   |  ||||||  ||| |  ||||  ||||   |  |   | | |  | || ||   ||  || || |       
GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaagttgctacactgtaattggaggttagaagttaaaaatcatgcattgactgcaggtgatcggatagttatgtactattattagatgtacta------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771874|gb|DR969811.1|DR969811
EST:     AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTG                         GTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
genomic: AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
EST: gi|86468449|gb|DY234819.1|DY234819
EST:     CCTATCTTGTCAATGGTGTTACGATGTTTTTTGCATGGCTG                         GTGGCACGGATCATTTTGTTCTTCTACTTGTTTTACCACATTTACTTCCAC
genomic: CCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
EST: gi|74237536|gb|DT645450.1|DT645450
EST:     AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTG                         GTGGCACGGATCATTTTTGT-CGTCTAC
genomic: AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTT-GTTCGTCTAC
EST: gi|74237535|gb|DT645449.1|DT645449
EST:     AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTG                         GTGGCACGGATCATTTTGTTCGTTTACTTGTTTTACCACATTTACTTCCAC
genomic: AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
EST: gi|149112320|gb|EE295211.2|EE295211
EST:     AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTG                         GTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
genomic: AATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC
EST: gi|76918369|gb|DV167265.1|DV167265
EST:     ATCTA-GGCCTATCTTGTCAATGGGTGT-ACGATGTTTATTGCATGGCTG                         GTGGCACGGATCATTTTGTTCGTCTACTTGTTTTAC-ACATTTACTTCCAC
genomic: ATCCAAGGCCTATCTTGTCAATGG-TGTTACGATGTTTATTGCATGGCTGgtatgttact ... cttcatgcagGTGGCACGGATCATTTTGTTCGTCTACTTGTTTTACCACATTTACTTCCAC