1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAACTTGTCATAGTTCCCTCGAAGAAAGACCTGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagtattgtcattgtccttgttttatgtgtctgctatcttttctgatgtttcctttccctgaataaactaatttattctgttgctatcaccatatggcag
species | Zea mays |
transcript | GRMZM5G821551_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAG GCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAGEST: gi|32850719|gb|CD990400.1|CD990400
genomic: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagta ... catatggcagGCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAG
EST: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGCCCTGGAAGCATTGGAG GCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAGEST: gi|31349068|gb|CD433425.1|CD433425
genomic: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagta ... catatggcagGCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAG
EST: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAG GCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAGEST: gi|32867016|gb|CF006698.1|CF006698
genomic: TGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagta ... catatggcagGCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAG
EST: GGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAG GCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAG
genomic: GGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagta ... catatggcagGCTATGAGTGAGAAGGAAGCATTTGAGATGAAAGCTGAACTAGAGACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTTGTCATAGTTCCCTCGAAGAAAGACCTGGGGCTGGCTTTTAAGGGCAACCAAAAGATGGTCCTGGAAGCATTGGAGgtaacaagtattgtcattgtccttgttttatgtgtctgctatcttttctgatgtttcctttccctgaataaactaatttattctgttgctatcaccatatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG