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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACCgtatcctttaacagcttcatccttgtctgtgtactaattattaatgctgagttacacttcttacctctgacgtgtttccagttaactaagcaaacag

Basic information

species Zea mays
transcript GRMZM5G820727_T01
intron # 7
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T05 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 6
ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACCgtatcctttaacagcttcatccttgtctgtgtactaattattaatgctgagttacacttcttacctctgacgtg-tttccagttaactaagcaaacag
||| |||||||| ||||||||||| || || |||||||||||||| || || |||||||||||||||||  |   | |||  |||| ||||           |||| ||    ||||  | ||| ||  | | | || ||||||||  ||| ||
ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTCGACCgtatcctttaacaattaactgcttcgctgtttact-----------ctgaatt----ttctagcttcttacaagatatgcacttaactaaataaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|108824145|gb|EC278153.1|EC278153
EST:     GTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC                         ATATGGTTGGATGGAGAACATCATCAATCCGACGTCAGCATGAGTGGCCAA
genomic: GTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACCgtatccttta ... aagcaaacagATATGGTTGGATGGAGAACATCATCAATCCGACGTCAGCATGAGTTGCCAA