1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatagatcgataatgatcatttggcatccttcatggacttttggttccttgattgttttttagtttcatgctttgattaattttattgtgtacatcatcag
species | Zea mays |
transcript | GRMZM5G816609_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|87157733|gb|DY402522.1|DY402522
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|31361134|gb|CD445491.1|CD445491
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|78179098|gb|DV549471.1|DV549471
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|12046100|gb|BF728239.1|BF728239
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TCGCAATCTTTCAAGTGTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|89763994|gb|DY690961.1|DY690961
genomic: TCGCAATCTTTCAAGT-TATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|26559722|gb|CA831957.1|CA831957
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|67013648|gb|CO442397.1|CO442397
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|6760600|gb|AW324699.1|AW324699
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGNTGACCCTTEST: gi|67041940|gb|CO468195.1|CO468195
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|71764383|gb|DR962320.1|DR962320
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTTEST: gi|22819353|gb|BU499443.1|BU499443
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
EST: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCGGCTCATCTGTTTTGT GTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatag ... acatcatcagGTTAGAATTGCTCAGGGCCTTGTTCACCTCGGAAAGGGCTTGTTGACCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatagatcgataatgatcatttggcatccttcatggacttttggttccttgattgttttttagtttcatgctttgattaattttattgtgtacatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA