1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCTGGCTATATATCTCTGGGGTTTTATGTTTGTATTAGCTCTACTGATGATGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatcttgttctagtgagtagtgatagctccaactagtggtggatctagaaatgatgcaggagggggctacatagtaggaggctagaaatcctaca...
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTCEST: gi|76293281|gb|DV032849.1|DV032849
genomic: GATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
EST: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCTCTEST: gi|71330641|gb|DR802092.1|DR802092
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCC-CT
EST: GATCA-TATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAAAA-CTGGCAGCTTCCCTCEST: gi|7162447|gb|AW520069.1|AW520069
genomic: GA-CAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
EST: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTCEST: gi|211231534|gb|FL255918.1|FL255918
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
EST: TGACCATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTTCCTGAAGGAGTCCTCAGGGAAAAAATA-AGAAGCTGGCAGCTTTCCTEST: gi|211231535|gb|FL255919.1|FL255919
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTT-CCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCT
EST: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTCEST: gi|6194775|gb|AW146879.1|AW146879
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
EST: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTCEST: gi|211274143|gb|FL330839.1|FL330839
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
EST: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCT CTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
genomic: TGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatct ... atgtcaacagCTTCCTGAAGGAGTCCTCAGGGAAAAAATAGAGAAGCTGGCAGCTTCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGCTATATATCTCTGGGGTTTTATGTTTGTATTAGCTCTACTGATGATGACAATATACCCCATTGTGATAGCTCCTCTGTTCAACAAGTTCACTCCTgtgagtatcttgttctagtgagtagtgatagctccaactagtggtggatctagaaatgatgcaggagggggctacatagtaggaggctagaaatcctaca
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