1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGACTTTTTGTTGTTATTGGGGCTGGTGGTGCAGGAAAAGCACTAGCATATGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTGgtattttcttgatcaggatgcttctactcaagaaatttgaccatatatctgcttagcttacatgataggcatccacatttacagtgtctaggacgcaatc...
species | Zea mays |
transcript | GRMZM5G804881_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTG CACGAGCTCAAGAACTCGCCCACATCATTGGCGGGACTGCTTTGACCCTGTEST: gi|78123002|gb|DV541386.1|DV541386
genomic: TGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTGgtattttctt ... aactttccagCACGAGCTCAAGAACTCGCCCACATCATTGGCGGGACTGCTTTGACCCTGT
EST: TGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTG CACGAGCTCAAGAACTCGCCCACATCATTGGCGGGACTGCTTTGACCCTGT
genomic: TGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTGgtattttctt ... aactttccagCACGAGCTCAAGAACTCGCCCACATCATTGGCGGGACTGCTTTGACCCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTTTTTGTTGTTATTGGGGCTGGTGGTGCAGGAAAAGCACTAGCATATGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTGgtattttcttgatcaggatgcttctactcaagaaatttgaccatatatctgcttagcttacatgataggcatccacatttacagtgtctaggacgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaat