1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAATTATGTTGTTCCATTATGATGGTCGGACAACTGAGTGGGATGAATTTGAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgttcttttgtgtgtttgcaatgatcaggcccccattagaatgcaggatgccgcccgccctccattcttgtgtttttatggaaatgaaccggtt...
species | Zea mays |
transcript | GRMZM5G801369_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGGCTG-CCATGTGAGTG-CACAAAGCAGACCAAATG GTGGTATGCCAAACGATTTCTACATCCTGACATTGTTGCCCGCTACGACTAEST: gi|71438212|gb|DR819262.1|DR819262
genomic: AAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgtt ... tttacccaagGTGGTATGCCAAACGATTTCTACATCCTGACATTGTTGCCCGCTACGACTA
EST: GAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATG GTGGTATGCCAAACGATTTCTACATCCTGACATTGTTGCCCGCTACGACTAEST: gi|149062889|gb|EE157609.2|EE157609
genomic: GAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgtt ... tttacccaagGTGGTATGCCAAACGATTTCTACATCCTGACATTGTTGCCCGCTACGACTA
EST: GAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATG GTGGTATGCCAAACGATTTCTACATCCTGACATTTGT-GCCCGCTACGACTEST: gi|71301944|gb|DR787048.1|DR787048
genomic: GAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgtt ... tttacccaagGTGGTATGCCAAACGATTTCTACATCCTGACATT-GTTGCCCGCTACGACT
EST: GAGTGGTCAAAAAGGGGCGTCCATGTGAGTGTCACAAAGCAAACCAAATG GTGGTATGCCAAAC
genomic: GAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgtt ... tttacccaagGTGGTATGCCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTATGTTGTTCCATTATGATGGTCGGACAACTGAGTGGGATGAATTTGAGTGGTCAAAAAGGGCCGTCCATGTGAGTGTCACAAAGCAAACCAAATGgtgagttgttcttttgtgtgtttgcaatgatcaggcccccattagaatgcaggatgccgcccgccctccattcttgtgtttttatggaaatgaaccggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatgaa