Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGGgtgagacttgttgcaccggcattattccttgttatgagatttcagttagtctaattcggcaccttgcttatccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G704032_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 7
GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGGgtgagacttgttgcaccggcattattccttgtta-tgagatttcagttagtctaattcggcaccttgcttatccag---
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GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactagtctcaatagcaattttctttattaacgagatctgttataatataatccagcaccttcttttttgtacag
upper sequence: GRMZM2G704032_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 7
GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGGgtgagacttgttgcaccggcattattccttgttatgagatttcagttagtctaattcggcaccttgcttatccag--------------------------------------
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GTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATgtaggtttctttgtctta--agtgctaaaaaatgcattttgttaataagttgtgtttgttaaaatgctgacatgaaagctttatataaggttttatgacctataattttgcag
upper sequence: GRMZM2G704032_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 7
GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGGgtgagacttgttgcaccggc--------attattccttgttatgagatttcagttagtctaattc-ggcaccttg--cttatccag--------------------------
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GTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTGCgtaggtttctttgtcttaagtgctaaaaaatgcattttgttaataagttgtgtttgttaaaatactgacatgaaagctttatataaggtttttatgacctataattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211285783|gb|FL373361.1|FL373361EST: GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTGATGG GATTGCGGAATGCTTTGCATTTCTTGTCTGTACAAGATGGTTTAATCCCA
genomic: GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATT-ATGGgtgagacttg ... gcttatccagGATTGCGGAATGCTTTGCATTTCTTGTCTGTACAAGATGGTTTAATCCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGGgtgagacttgttgcaccggcattattccttgttatgagatttcagttagtctaattcggcaccttgcttatccag
- - - - - - - - - - TGGTGG