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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatatatcttttgagcacttgttttgtttttgctaaaccactctttttagtttgctgggaggatttatgtatgtttagtttgaagttctaaagttt...

Basic information

species Zea mays
transcript GRMZM2G540538_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 7
GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatatatcttttgagcacttgttttgtttttgctaaaccactcttt-ttagtttgctgggaggatttatgtatgt-ttagtttga--agttctaaagttt--
 ||| || |||||||  | ||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||      || | |||||   || |    ||||||| |   ||   ||  | | ||   | || |||||| |||   | | || |  |  | || |  |   |  
ATCACTGGTTGCAAACTTATCAGCAGCAAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgta------atttattgagatattctgagctttttgccaccacatatttcatcacttaatttgggggatttctgtgcatatcagctgcattaattgtgcaaactct

upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G33910.3 (Glycine max), 5'ss of exon 4
GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatat-----atcttttgagcacttgttttgtttttgctaaaccactctttttagtttgctgggaggatttatgtatgtttagtttgaagttctaaagttt----
|||  |  | || ||  |  |||| ||||| || ||||||||||| ||| | ||||||||||| || |||||||||||||   | |      ||| |  ||    | |||| ||| ||      |    |   |   |   |  | ||| | |  | | |||| | || | || |           
GTCTCTTGTGGCGAACTTAGCAGCTGCAAATTGCTACAAATCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGgtaccctgtcattggtctatgcaggctctcttttatttctgtctccacttcatagctgactaattcagtggactgacat-tttttattgtgcaattttttctcacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654569|gb|BM499374.1|BM499374
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGNGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|9952767|gb|BE639350.1|BE639350
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTG
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTG
EST: gi|211299293|gb|FK964182.1|FK964182
EST:     AACTGTTTACAA-TCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAA-TACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AACTGTT-ACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|213175717|gb|FM182537.1|FM182537
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|1498091|gb|AA030701.1|AA030701
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|18648924|gb|BM497743.1|BM497743
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTA
EST: gi|211406117|gb|FK964261.1|FK964261
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAAGGCAAA-TACATCTACATTGCTGGATTTTTCCTTACAGTGT
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAA-GGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGT
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|111433446|gb|EE297763.1|EE297763
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211425413|gb|FL239286.1|FL239286
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|28931167|gb|CB334528.1|CB334528
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|37396080|gb|CF635327.1|CF635327
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|71768280|gb|DR966217.1|DR966217
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|18654717|gb|BM499522.1|BM499522
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACA
EST: gi|67022254|gb|CO451003.1|CO451003
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|30031919|gb|CB833770.1|CB833770
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGG-AAAATACATCTACATTGCTGG
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGG
EST: gi|67018775|gb|CO447524.1|CO447524
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67020661|gb|CO449410.1|CO449410
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|30087102|gb|CB885310.1|CB885310
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACA
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|5555550|gb|AI881501.1|AI881501
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|33096147|gb|CF056141.1|CF056141
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|18649868|gb|BM498687.1|BM498687
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         CTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211535006|gb|FL000875.1|FL000875
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGA-CTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACA
EST: gi|67012632|gb|CO441381.1|CO441381
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|18649867|gb|BM498686.1|BM498686
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTG
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTG
EST: gi|37400560|gb|CF637635.1|CF637635
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67028257|gb|CO457006.1|CO457006
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211425412|gb|FL239285.1|FL239285
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|18384280|gb|BM417479.1|BM417479
EST:     AA-CTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAGAATACATCTACATTGCTGGATTTTTCCT
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCT
EST: gi|20811213|gb|BQ295691.1|BQ295691
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|13150078|gb|BG320400.1|BG320400
EST:     AAACTG-TACAAATCTGAGCATCT-AAGAGACCAGAGAAC-KGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|32919378|gb|CF024190.1|CF024190
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211406116|gb|FK964260.1|FK964260
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAA
EST: gi|211408679|gb|FK964274.1|FK964274
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTT
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTT
EST: gi|40303855|gb|CK348242.1|CK348242
EST:     TGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: TGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211301441|gb|FK964208.1|FK964208
EST:     AA-CTGGTACAGATCTGAGCATCTAAAGAGACCAGAGAACTGG-CACTAG                         TTGAAA-GGCAAA
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAA
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|24773803|gb|CA409057.1|CA409057
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGCCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|15313680|gb|BI478902.1|BI478902
EST:     AGAG-ACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGATAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|5901147|gb|AW042247.1|AW042247
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67024289|gb|CO453038.1|CO453038
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|24961588|gb|CA483591.1|CA483591
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67028036|gb|CO456785.1|CO456785
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67022396|gb|CO451145.1|CO451145
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|67039373|gb|CO465628.1|CO465628
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|37400718|gb|CF637717.1|CF637717
EST:     AGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|15177615|gb|BI398554.1|BI398554
EST:     CCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACA-TGCTGGATTTTTCCTTACAGTGTCGC
genomic: CCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG                         TTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
genomic: AAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatata ... ttgatgacagTTGAAAAGGCAAAATACATCTACATTGCTGGATTTTTCCTTACAGTGTCGC
EST: gi|211535002|gb|FL000871.1|FL000871
EST:     ACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGGCACTAG
genomic: ACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGG-CACTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAGgtataatatatcttttgagcacttgttttgtttttgctaaaccactctttttagtttgctgggaggatttatgtatgtttagtttgaagttctaaagttt

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA