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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGTCCTCAATTTCTTTATCAGCAGTATACCCACTTCTGGAATGTACACTATCATGTTCGGCCTTTGCAGACAACCGTCATACTGGATAACGCTGGTGgtaagttctgctagatgtttttttattggttttgtaaaggcttcatgcatgcattcatcgaatcgtattgaccataatgtgtcattgttccag

Basic information

species Zea mays
transcript GRMZM2G479163_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G479163_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g25980.2 (Oryza sativa), 5'ss of exon 25
CTATGTCCTCAATTTCTTTATCAGCAGTATACCCACTTCTGGAATGTACACTATCATGTTCGGCCTTTGCAGACAACCGTCATACTGGATAACGCTGGTGgtaagttctgctagatgtttttttattggttttgtaaaggcttcatgcatgcattcatcgaatcgtattgaccataatgtgtcattgttccag
|||  || | |||||||| ||||||||||||||  || |||| |||||||||||||||||| | ||||||||||| ||  |||| ||| |||| ||| ||||| ||  |  || |   ||||  ||| | | || |||   |  |||  |   || ||  |||     | ||  |  | || || |||| |||
CTACATCATAAATTTCTTCATCAGCAGTATACCATCTGCTGGGATGTACACTATCATGTTCCGGCTTTGCAGACAGCCAACATATTGGGTAACACTGCTGgtaggta-tattacacacttttg-atttgctgtgcaaaaaat--atg-gtaggtttattaaat-----taacactgttctggcaatgtttcag