1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAGAAAATGGCCGATGCCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccaccggtttggtcacatctgttctcggtggctgctggggccctaacaacagcaccaacctcggcag
species | Zea mays |
transcript | GRMZM2G478779_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCG-GGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGEST: gi|18965167|gb|BM661429.1|BM661429
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccacc ... acctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTG
EST: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGEST: gi|19058066|gb|BM736733.1|BM736733
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccacc ... acctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTG
EST: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCTGGCGTCGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGEST: gi|21390301|gb|BQ528350.1|BQ528350
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccacc ... acctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTG
EST: ACGGAACTGGCATGGTCAAG GCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCTCAGCATCGTEST: gi|8103062|gb|AW927727.1|AW927727
genomic: ACGGAACTGGCATGGTCAAGgtgagccacc ... acctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCC-CAGCATCGT
EST: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTG
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccacc ... acctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAAATGGCCGATGCCGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtgagccaccggtttggtcacatctgttctcggtggctgctggggccctaacaacagcaccaacctcggcag
- - - - - - - - - GAGGAT