1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGAGAAATGAACTAGAAGAACCACGGAGTTCTGAAGGTGATCAACTCCCAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctgaatctactttttgcagaattcggaagatttatgagtgtcactaccgtttgctcattttcttgcttcttttggccaattcttttgacatcaccatgcag
species | Zea mays |
transcript | GRMZM2G462803_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCAEST: gi|32832902|gb|CD972580.1|CD972580
genomic: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... caccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCA
EST: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCAEST: gi|83278442|gb|DV942450.1|DV942450
genomic: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... caccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCA
EST: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCAEST: gi|37401321|gb|CF638023.1|CF638023
genomic: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... caccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCA
EST: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCA
genomic: CAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... caccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGCGAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAGAAATGAACTAGAAGAACCACGGAGTTCTGAAGGTGATCAACTCCCAAGGCTTCAAAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctgaatctactttttgcagaattcggaagatttatgagtgtcactaccgtttgctcattttcttgcttcttttggccaattcttttgacatcaccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA