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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatctccctatttatctctaaatgctctatttaggagaaaaatgctgtttggccaaaagatattgagtgtgtttgggaccacagttgcaggcca...

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 7
ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatctccct---atttatctct-aaatgctctatttaggagaaaaatgctgtttggccaaaagatattgagtgtgtttgggaccacagttgcaggcca-
|||| ||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||| | ||  ||   | | || ||| ||||||| |||| || |     ||  || ||  |   |     | || ||   ||| ||      ||  | |    
ATGTTCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATTCTGGATCAGTGgtaattgaccttacttttactaatatctcaaatgctttattcagcatgtgcatagtgcttcacttga-----tcgattgatgttgtgattttgtttaaatgaacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14529467|gb|BI096600.1|BI096600
EST:     TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG                         GTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGA
genomic: TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatc ... gtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGA
EST: gi|93012882|gb|EB638402.1|EB638402
EST:     TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG                         GTTGAGTTTATACCAAAATTC
genomic: TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatc ... gtgatcgcagGTTGAGTTTATACCAAAATTC