Sequence
atgc intronic sequence ATGC exonic sequenceATAATCCACAAACACTTACCCATGAAAGTTTTTAGTGGCCATAAAGATGAGGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcggatcttgtccatttcacaatgtttgtcatctgctatgatgtttaaaatatttccatagtagagaattcatgtagttccctctgtttcatatccaaaataaatcatcaataccatttaatttggtatatggacattctcaattccacatggattaatgccttttctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 7
ATAATCCACAAACACTTACCCATGAAAGTTTTTAGTGGCCATAAAGATGAGGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcggatcttgtccatttcacaat-gtttgtcatctgctatgatgtttaaaatatttccatagtagagaattcatgtagttccctctgtttcatatccaaaataaatcatcaataccatttaatttggtatatggacattctcaattccacatggattaatgccttttctatgcag
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AGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGgtgtgt----gatcttgtccatgctatatttgtttgtcacgtcctatgctgttt----tgctt-------agaaaac-cgtggcctgtcctgtgtt----------aatagaacatccatatgctttcatttcgtacatgggcattgagtatatca----atttaatgatttgcctatgcag
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g03990.1 (Oryza sativa), 5'ss of exon 7
ATAATCCACAAACACTTACCCATGAAAGTTTTTAGTGGCCATAAAGATGAGGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcggatcttgtccatttcacaatgtttgtcatctgctatgatgtttaaaatatttccatagtagagaattcatgtagttccctctgtttcatatccaaaataaatcatcaataccatttaatttggtatatggacattctcaattccacatggattaatgccttttctatgcag
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AGAATCCATAATCACGTACCTGTGAAAATATTTGGTAGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGgtgcgt----gatcttgtc---------------gtcacgtcctatgatgttt----tgctt-------agaaaact-atggcctgtcctgcgttc----------ataaaacatccatatgctttcatttcatacatgggcattgagtatatca----atttaatgattt----gtgcag
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S46_317V6.2 (Physcomitrella patens), 5'ss of exon 6
---ATAATCCACAAACACTTACCCATGAAAGTTTTTAGTGGCCATAAAGATGAGGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcggatcttgtccatttcacaat--gtttgtcatctgctatgatgtttaaaatatttcca--tagtagagaattcatgtagttccctctgtttcatatccaaaataaatcatcaataccatttaatttggtatatggacattctcaattccacatggattaatgccttttctatgcag
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ACCACAGTACGTCAA-GCTCCTCTACATA--TTTTTACTGGCCATAAAGATGAGGGCTATGCTCTTGACTGGAGTCCAATTACTGCAGGCCGTCTTCTTTCTGgtatgt-tggcacacctataatcacacgcttaggtgaaaataaaattgaactatcaaaatgattatacctgatcgaaaatataggttttttttttggattt------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33095104|gb|CF055098.1|CF055098EST: GGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTG GTGACTGCAATAAGTGCATTCACCTATGGGAACCGACTTCAAATAACTGGA
genomic: GGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcg ... ttctatgcagGTGACTGCAATAAGTGCATTCACCTATGGGAACCGACTTCAAATAACTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAATCCACAAACACTTACCCATGAAAGTTTTTAGTGGCCATAAAGATGAGGGATATGCCATTGATTGGAGTCCACTTGTTACTGGAAGACTTGTTTCTGgtttgtatcggatcttgtccatttcacaatgtttgtcatctgctatgatgtttaaaatatttccatagtagagaattcatgtagttccctctgtttcatatccaaaataaatcatcaataccatttaatttggtatatggacattctcaattccacatggattaatgccttttctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA