1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGTACATTTGTGATCGCCCATTGTTTGGCCGAGTCCAAGAAAGCAGAGACAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgactaattagtttcttatgggcttccttcaaaaaatattttcagtctcatgctccttttttaatactgtattgtgacagtacacctattgcacc...
species | Zea mays |
transcript | GRMZM2G458549_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCACCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTEST: gi|78111011|gb|DV529408.1|DV529408
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCT
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|32833835|gb|CD973513.1|CD973513
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAAATTATAATACCCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|17921536|gb|BM259187.1|BM259187
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|211541591|gb|FL022794.1|FL022794
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: AATAACCGCGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCCEST: gi|17921866|gb|BM259517.1|BM259517
genomic: AATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|32943061|gb|CF047880.1|CF047880
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|211541592|gb|FL022795.1|FL022795
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: TAATAACCGCGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCCEST: gi|32835728|gb|CD975406.1|CD975406
genomic: TAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCEST: gi|211139371|gb|FL028742.1|FL028742
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: CAGCTGCAACAANTTATAATAACCGCGTTGTGGAGTGTCGCTTANCAGCG ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTACATTTGTGATCGCCCATTGTTTGGCCGAGTCCAAGAAAGCAGAGACAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgactaattagtttcttatgggcttccttcaaaaaatattttcagtctcatgctccttttttaatactgtattgtgacagtacacctattgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaata