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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGGTACACACTACATACCCCAACTGCCTTTCAGTAgtcagtcatgttcaaacattaaatgtttccttattctttttaaattcttaattgcatttgcag

Basic information

species Zea mays
transcript GRMZM2G451672_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 5'ss of exon 5
---------------------------------AATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGGTACACACTACATACCCCAACTGCCTT----TCAGTAgtcagtcatgttcaaacattaaatgtttcc---------ttattctttttaaattcttaattgcatttgcag
                                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |  ||  ||| | | | ||    |||    || ||       |||   | | |     |         ||  |  |||||| ||   | || | |||||||
CAAAATAATGGAAGATCGTAGCAACCAAGTTGCAATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAATCGTCATGTGgtacatattcaatctccctaattcattgtgctcaaagttctgtggaaacaaaatgctcatttcaagcacaacacagttccttcttttaatttagaagttacttttgcag

upper sequence: GRMZM2G451672_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
---------------------------------AATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGGTACACACTACATACCCCAACTGCCTTTCAGTAgtcagtcatgttcaaacattaaatgtttccttattctttttaaattcttaattgcatttgcag
                                   |  | ||||| || ||||| ||  | |||||||||||||||||||| ||||| ||| |||||||||||    |||     |   |   |     | |  | |||  | |||    |||   || ||  | ||| |  ||||  | |||             
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgca--attttttagt--tcttctgctatttggtggttg-tgattgtccttaatattttacag----------

upper sequence: GRMZM2G451672_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 5
---------------------------------AATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGGTACACACTACATACCCCAACTGCCTTTCAGTAgtcagtcat-gttcaaacattaaatgtttccttattctttttaaattcttaattgcatttgcag
                                   || | ||||| || |||||  |  ||||||| |||||||||||||| ||||| || ||||||||||||    |   | |       |  |||| |  | | |||  | | |     |||      |     ||||| ||  |||| ||       || ||||
AAAGATAATGCAAGATGAAGGAAACCGTGCAGTTGTTGGTAAAGATGAGAATGCAATGCGGCAGCTCATAAGCATGATAAGTAGTGACAATCGTCATGTGgtatgt-cagtaaatttt---taacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttctgacttttggcag