1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTACCTCCTAAGACAATTAATCTGAATAAAGTAGATTTCACACAAGAGGAGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatgtcttcaagttccacgtgatttatcttttttttcctggacagtgccttggtgttgctattttctcttaaaacttctttgttatatgttgcc...
species | Zea mays |
transcript | GRMZM2G449355_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAG GCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGCCAACATCCTTTTAEST: gi|211322659|gb|FL233009.1|FL233009
genomic: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatg ... tctatttcagGCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGCCAACATCCTTTTA
EST: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAG GCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGCEST: gi|32931031|gb|CF035843.1|CF035843
genomic: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatg ... tctatttcagGCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGC
EST: TGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAG GCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGCCAACATCCTTTTAEST: gi|211322654|gb|FL233004.1|FL233004
genomic: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatg ... tctatttcagGCATTTGCTGCGGCTGGGACACTCAAACAAAACTATGCCAACATCCTTTTA
EST: AGCGGTCGTTTTATTTGATGCYGGAAGAACGCTCTCGGCAACAATTCAAG GCATTTGCTGCGGCTGGGACACTCAAAACAAAAACTATGCCAACATC
genomic: AGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatg ... tctatttcagGCATTTGCTGCGGCTGGGACACTCAAA-CAAAA-CTATGCCAACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTACCTCCTAAGACAATTAATCTGAATAAAGTAGATTTCACACAAGAGGAGCGGTCGTTTTATTTGATGCTGGAAGAACGCTCTCGGCAACAATTCAAGgttggttatgtcttcaagttccacgtgatttatcttttttttcctggacagtgccttggtgttgctattttctcttaaaacttctttgttatatgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC