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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgattcattttgatgttatttgtggttctataaaattgtcccaggctcacattttcaaaattgtattaaccatttcag

Basic information

species Zea mays
transcript GRMZM2G448715_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G448715_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 7
GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat--tcattttgatgttatttgtg-gttctataaaattgtcccaggct-cacattttcaaaattgtattaaccattt-cag
| |||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||     || ||  |||  ||||   |  |    | || |   |||||  |    || || | ||   |  |||||| |||
GATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGgtatactcatgacacttctggcgttgcttgtacatattgaccagttctttaaggctgtaatcctttaataatgctatgtccattttcag

upper sequence: GRMZM2G448715_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT1G61250.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatact-----gattcattttga-tgttatttgtggttctataaaattgtcccaggctcacatt-------ttcaaaatt--gtattaaccatttcag
||||||||   || || ||||||||| |||| || |||||||||||||||||||| || |||||| |  |       |  ||||  | ||||  ||||  |||| ||| |    |  |    || |||       || | | ||  || |||     |||||
GGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagag-accttaaatgcatattaacaggcttaagagtttggttttattttgttcag

upper sequence: GRMZM2G448715_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgattcattttgatgttatttgtggttctataaaattgtcccaggctcacattttcaaaa-ttgtattaaccatttcag---
| |||||    |||||    |||||| |  |||||||||| ||||||||||| |||||||||||| || |     | |||| |    |         |    |||  |   |  ||  |||  |      ||| |||  |  |    |   
GTTTGGTACTTTGCCTTACATGGAATATTGTAGCAGTTACCACAGCTTGGATTAAGGGGGAAGgt-tagtttggaactttgttcacctcccaaaccttggggaat-attgtaaccttccataattgggtcttgaatttgctttccttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048315|gb|EB158733.1|EB158733
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|76931490|gb|DV172743.1|DV172743
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|89251197|gb|DY622983.1|DY622983
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGGTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|37621886|gb|CF674939.1|CF674939
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCA-GGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATA
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATA