1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAACTGTATCCCAAGAATGGTGGAGTACTTGAAAGGAAAAGTACTTAGAGGTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAGgtattctttgaatcttgatttttacacattgttcttgcattatgagaattgaacacatctattgatttaatcctttttttaag
species | Zea mays |
transcript | GRMZM2G443668_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAG GTGTTCACTTGGGGCCATCGCCTTGTCACCCCACGGCGTGTCGGAGTAGCTEST: gi|31359144|gb|CD443501.1|CD443501
genomic: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAGgtattctttg ... tttttttaagGTGTTCACTTGGGGCCATCGCCTTGTCACCCCACGGCGTGTCGTAGTAGCT
EST: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAG GTGTTCACTTGGGGCCATCGGCTTGTCACCCCACGGCGTGTCGGAGTAGCTEST: gi|21987578|gb|BQ779106.1|BQ779106
genomic: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAGgtattctttg ... tttttttaagGTGTTCACTTGGGGCCATCGCCTTGTCACCCCACGGCGTGTCGTAGTAGCT
EST: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAG GTGTTCACTTGGGGCCATCGCCTTGTCACCCCACGGCGTGTCGGAGTAGCT
genomic: GTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAGgtattctttg ... tttttttaagGTGTTCACTTGGGGCCATCGCCTTGTCACCCCACGGCGTGTCGTAGTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTGTATCCCAAGAATGGTGGAGTACTTGAAAGGAAAAGTACTTAGAGGTGTTTCTGCAGCAAAGTATCATACAATAGTGTTAGGAGCTGATGGAGAGgtattctttgaatcttgatttttacacattgttcttgcattatgagaattgaacacatctattgatttaatcctttttttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA