Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataacttttccactattcagtcattcttcaaagtaggcagttgctttttaggtaaatttgtataattgtatggaaacatcacctcactgccttaacc...

Basic information

species Zea mays
transcript GRMZM2G442404_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G442404_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g15594.1 (Oryza sativa), 5'ss of exon 7
GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataacttttc-----cactat-tcagtc-----attcttcaaagtaggcagttgctttttaggtaaatttgtataattgtatggaaacatcacctcactgccttaacc-----------------------------------------------------------------
|||||||   ||| ||| ||  |||||||||| ||||| ||||| || || ||||||||||| |||||||||||||||||||     |     || ||| |||  |     |   ||| || |   || |         | |   | ||||  |||| |   || |||||| | | || |||  |                                                                  
GAAGAACTTGTCAATGAAGACTTGGAATGCCTCGTTCTTGCTAGCGATGGACTTTGGGATGTCGTGGAAAATGAGgtaataaaccaccaagcacattatctcaacctgaaaacgattcgaatttctcaatgaaaccactgctgcttatgtagcattgaaca-aagcatcactttattgtcttctctgtctgatctgggtatacatttttaatgattgctaaattctctgataattctgtttaccaaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37398527|gb|CF636579.1|CF636579
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|4776156|gb|AI665159.1|AI665159
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|211024205|gb|FL472254.1|FL472254
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|32863266|gb|CF002948.1|CF002948
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|37375819|gb|CF624378.1|CF624378
EST:     GCCTGGTTCTCG-TAAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: GCCTGGTTCTCGCT-AGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|32925505|gb|CF030317.1|CF030317
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|148973759|gb|EE024892.2|EE024892
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|71307033|gb|DR789670.1|DR789670
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|111188864|gb|EE287000.1|EE287000
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|71428856|gb|DR809906.1|DR809906
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|211366188|gb|FL288085.1|FL288085
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|149051712|gb|EE155827.2|EE155827
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|148950086|gb|EC895621.2|EC895621
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|37374878|gb|CF623839.1|CF623839
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|60343417|gb|DN210390.1|DN210390
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|71317759|gb|DR795638.1|DR795638
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|86466746|gb|DY233116.1|DY233116
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: gi|211366190|gb|FL288087.1|FL288087
EST:     AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG                         GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG