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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGATCCTCACTTCAGGTGGAGCCTATAAGAACAGCGCCGAGGTCACCCAGAACAACTGCCGCACCGACAGAGCCAATCTCATCTCTTCTGCCCCATGgttagtacccttgcccaacatcatgttaagtgtatggtggaatttatattggattgccatttggtataattgatccattgacttcgcacag

Basic information

species Zea mays
transcript GRMZM2G437859_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55500.4 (Oryza sativa), 5'ss of exon 7
CTCAGATCCTCACTTCAGGTGGAGCCTATAAGAACAGCGCCGAGGTCACCCAGAACAACTGCCGCACCGACAGAGCCAATCTCATCTCTTCTGCCCCATGgttagtacccttgcccaacatcatgttaagtgtatggtggaatttatattggattgccatttggtataattg----atccattgacttcgcacag--------
|||| ||||||||| ||||||| || |||||| | ||| | |||||||| |||| |||||||||||| ||| | ||||||||||||||||| || |||||||| ||  |  |||  |   ||   |  | | | || |    || || |   |  |  |  |   ||  ||      |  ||   |||    |          
CTCAAATCCTCACTGCAGGTGGCGCGTATAAGCATAGCCCTGAGGTCACTCAGATCAACTGCCGCACTGACCGTGCCAATCTCATCTCTTCCGCGCCATGgtttgt--ctctgcttattttcccatcgaatttgtgatatctttaatgtgccaa-gtaaactaaaatggttacggtgttaatgtgctttatgctatccttagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71310987|gb|DR791795.1|DR791795
EST:     CAGAACAACTGCCGCACCGACAGAGCCAATCTCATCTCTTCTGCTCCATG                         GATTAAGATCCCCTACCCACTGCTATGGGGTGCGCCGACCTTCA-CGCCGG
genomic: CAGAACAACTGCCGCACCGACAGAGCCAATCTCATCTCTTCTGCCCCATGgttagtaccc ... cttcgcacagGATTAAGATCCCCTACCCACTGCAATGGGGTGCGCCGACCTTCAACGCCGG