1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGAGAGATTGTTCGAAGAATTTTACTCAAGTTGGCACATGACGCTTCTCTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttcttgtcctgtggacatcgagctgttcgtgcctgttttctcagcttacatgatcatgggcattgaattataacgcattgacatttgacattt...
species | Zea mays |
transcript | GRMZM2G432801_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAACEST: gi|32932001|gb|CF036813.1|CF036813
genomic: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
EST: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAACEST: gi|56382496|gb|CV985165.1|CV985165
genomic: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
EST: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAACEST: gi|24934191|gb|CA452409.1|CA452409
genomic: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
EST: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAACEST: gi|32910944|gb|CF015756.1|CF015756
genomic: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
EST: CTATTTGGAGATGTTGTTCCAACTAAGCTGGATCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAACEST: gi|88755828|gb|DY539969.1|DY539969
genomic: CTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
EST: TATTTGGAGATGTTTGT-CCAACTAAGCTGGAGCAGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
genomic: TATTTGGAGATGTT-GTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttc ... ggtataacagGACGCCAGATATGTCAGCCATGCATCATGACTCTTCGCATGACCTCAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAGAGATTGTTCGAAGAATTTTACTCAAGTTGGCACATGACGCTTCTCTATTTGGAGATGTTGTTCCAACTAAGCTGGAGCAGCCATTTATATTGAGgtatgctttcttgtcctgtggacatcgagctgttcgtgcctgttttctcagcttacatgatcatgggcattgaattataacgcattgacatttgacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG