1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGGACTAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAATACCGAGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacatatggttgcctacatcagatcattaaactggatttcttaacagttttttctttcgcagattcacattatgtcctatatgattgcattatttgtcatttagagagctgatgcgagccaaaatttaatcctctatttttttcttgtttccttctcaattggtag
species | Zea mays |
transcript | GRMZM2G432128_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211423961|gb|FL408856.1|FL408856
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|148957374|gb|EC903424.2|EC903424
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211317120|gb|FL381346.1|FL381346
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGGCTEST: gi|6695772|gb|AW288850.1|AW288850
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTG-CT
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211332798|gb|FL423282.1|FL423282
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGA-GAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|149110655|gb|EE190535.2|EE190535
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|33101480|gb|CF061440.1|CF061440
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|31612230|gb|CD568852.1|CD568852
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTEST: gi|67031198|gb|CO459947.1|CO459947
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGT
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|149031177|gb|EE286335.2|EE286335
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211264490|gb|FL417909.1|FL417909
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211097134|gb|FL375411.1|FL375411
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCEST: gi|31356012|gb|CD440369.1|CD440369
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGC
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AAGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|74237580|gb|DT645494.1|DT645494
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|148937601|gb|EC881791.2|EC881791
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|76286556|gb|DV026124.1|DV026124
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|32845300|gb|CD984981.1|CD984981
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|60343928|gb|DN210901.1|DN210901
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|67023195|gb|CO451944.1|CO451944
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|148961311|gb|EE012038.2|EE012038
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|149055178|gb|EE156095.2|EE156095
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|211392274|gb|FL373436.1|FL373436
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|6695773|gb|AW288851.1|AW288851
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAG-TCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|13198145|gb|BG354175.1|BG354175
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|32844807|gb|CD984488.1|CD984488
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|32844692|gb|CD984373.1|CD984373
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGACCAGATTGATCTGGAGGTATTCACCTTCACTGGTGCTGEST: gi|211197469|gb|FL425784.1|FL425784
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGEST: gi|32940854|gb|CF045673.1|CF045673
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTG
EST: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTG AGGGAAAAGAAGAACCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCT
genomic: AGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacat ... caattggtagAGGGAAAAGAAGAAC-AGATTGATCTGGAGGTATTCAACTTCACTGGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAATACCGAGCTACCGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGgtatggacatatggttgcctacatcagatcattaaactggatttcttaacagttttttctttcgcagattcacattatgtcctatatgattgcattatttgtcatttagagagctgatgcgagccaaaatttaatcctctatttttttcttgtttccttctcaattggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC