Sequence
atgc intronic sequence ATGC exonic sequenceATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttgtagtattgccttctgttggtctaaactaacaatgtgttgtgtaactatcaactggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 14
ATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttgtagtattgcct--tctgttggtctaaactaa-caatg-tgttgtgtaac-tatcaactggcag
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ATGTGCCCAGCTTGTCTTTGCACCCATTGACGAATCTTTTGCTGATGATGCACCACTGCTACCCTCAGGCTTCCGTGTGATACCACTGGATGGCAAGACGgttagtgtaatttcttttgctctggcagctggatcttgtccgatcgcctaaactaaacaatggttcggtattatgtaccctactacag
upper sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
ATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttg-tagtattgccttctgttggtctaaactaacaatgtgttgtgtaactatcaactggcag----------------
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GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt
upper sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 14
ATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttg-tagtattgccttctgttggtc-taaactaacaatgt---gttgtgtaactatcaactggcag------------
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ATGTGCACAGCTTGTGTTTGCACCTATCGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACAgttagtggcatttctcagtagctcgatagttttgaagggaattggtcatgaagttattttgtttgattgctcttcttttttttgttgtttaattgccattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166679963|gb|EG153329.1|EG153329EST: CCACTGGATGCAAAGACG GATCCACCATCAGGCACACGCACACTTGACCTTGCATCTACCCTCGAGGTT
genomic: CCACTGGATGCAAAGACGgttagtacga ... caactggcagGATCCACCATCAGGCACACGCACACTTGACCTCGCATCTACCCTCGAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttgtagtattgccttctgttggtctaaactaacaatgtgttgtgtaactatcaactggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG